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    NovoMCP Open Corpus (lite)

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    Sold by: NovoMCP 
    Open data
    |
    Deployed on AWS
    122,454,458 PubChem compounds with RDKit physicochemical descriptors, ADMET/toxicity predictions from NovoMCP's own models (most trained on the public Therapeutics Data Commons ADMET benchmark; a few base heads on other public toxicology data such as Tox21), a machine-learned logP, and PAINS structural-alert flags. One row per PubChem CID, stored as Apache Parquet (Snappy) for direct in-place querying (Athena, DuckDB, PyArrow, pandas). An analysis-ready cheminformatics substrate for drug discovery: virtual screening, drug-likeness (QED) filtering, similarity search, chemical-space exploration, and training ADMET models at scale - so you don't recompute descriptors and property predictions across all of PubChem yourself. Per-endpoint model provenance is documented in the dataset card. Computed properties and model predictions for research use - not experimental measurements or regulatory determinations.

    Overview

    122,454,458 PubChem compounds with RDKit physicochemical descriptors, ADMET/toxicity predictions from NovoMCP's own models (most trained on the public Therapeutics Data Commons ADMET benchmark; a few base heads on other public toxicology data such as Tox21), a machine-learned logP, and PAINS structural-alert flags. One row per PubChem CID, stored as Apache Parquet (Snappy) for direct in-place querying (Athena, DuckDB, PyArrow, pandas). An analysis-ready cheminformatics substrate for drug discovery: virtual screening, drug-likeness (QED) filtering, similarity search, chemical-space exploration, and training ADMET models at scale — so you don't recompute descriptors and property predictions across all of PubChem yourself. Per-endpoint model provenance is documented in the dataset card. Computed properties and model predictions for research use — not experimental measurements or regulatory determinations.

    Features and programs

    Open Data Sponsorship Program

    This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.

    Pricing

    This is a publicly available data set. No subscription is required.

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    Usage information

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    Delivery details

    AWS Data Exchange (ADX)

    AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.

    Open data resources

    Available with or without an AWS account.

    How to use
    To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more 
    Description
    Parquet shards (21 files, 36.8 GB, 122,454,458 rows x 59 columns)
    Resource type
    S3 bucket
    Amazon Resource Name (ARN)
    arn:aws:s3:::novomcp-open-corpus/novomcp-open-corpus-lite/
    AWS region
    us-east-2
    AWS CLI access (No AWS account required)
    aws s3 ls --no-sign-request s3://novomcp-open-corpus/novomcp-open-corpus-lite//

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