
Overview
122,454,458 PubChem compounds with RDKit physicochemical descriptors, ADMET/toxicity predictions from NovoMCP's own models (most trained on the public Therapeutics Data Commons ADMET benchmark; a few base heads on other public toxicology data such as Tox21), a machine-learned logP, and PAINS structural-alert flags. One row per PubChem CID, stored as Apache Parquet (Snappy) for direct in-place querying (Athena, DuckDB, PyArrow, pandas). An analysis-ready cheminformatics substrate for drug discovery: virtual screening, drug-likeness (QED) filtering, similarity search, chemical-space exploration, and training ADMET models at scale — so you don't recompute descriptors and property predictions across all of PubChem yourself. Per-endpoint model provenance is documented in the dataset card. Computed properties and model predictions for research use — not experimental measurements or regulatory determinations.
Features and programs
Open Data Sponsorship Program
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This is a publicly available data set. No subscription is required.
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Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- Parquet shards (21 files, 36.8 GB, 122,454,458 rows x 59 columns)
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::novomcp-open-corpus/novomcp-open-corpus-lite/
- AWS region
- us-east-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://novomcp-open-corpus/novomcp-open-corpus-lite//
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How to cite
NovoMCP Open Corpus (lite) was accessed on DATE from https://registry.opendata.aws/novomcp-open-corpus-lite .
License
CC-BY-4.0 (https://creativecommons.org/licenses/by/4.0/ )
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