Sold by: BasepairÂ
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Basepair is a SaaS bioinformatics platform with a unique hybrid architecture that provisions in a customer's own account so that they remain in control of their IT governance, security and usage commitments with AWS. Because it abstracts away the DevOps it can help to accelerate time to production for bioinformatics workloads on AWS by as much as 8X. Moreover, its direct integration with AWS HealthOmics and advanced storage capabilities deliver up to 80% in cost savings.
Overview
Basepair is a SaaS platform for genomic data analysis and interactive visualization that can be used for multitude of application areas across epigenetics, genomics, transcriptomics and others.
Bioinformaticians can leverage the powerful CLI or APIs to deploy, orchestrate and scale their custom tools and pipelines built in any workflow language. The platform comes with advanced enterprise features that abstract away the DevOps, accelerating the migration and deployment of Next Generation Sequencing (NGS) workflows to the cloud, freeing you up to focus on the science.
Meanwhile, bench scientists can then use the point-and-click GUI to drag and drop their files to upload their raw data and run either those same custom workflows, or choose from a number of industry standard, peer reviewed tools and pipelines to analyze their data. Instead of just providing the resulting flat files and static html pages, Basepair's reports and project sharing hierarchy streamline interactive exploration of the resulting data and collaboration with bioinformatics teams to validate observations.
Pay-as-you-go per sample pricing includes unlimited users and re-analysis of data, with annual licenses scaling cost effectively to deliver much lower prices per sample.
Minimal configuration allows the platform to: a) leverage the storage AND compute resources in your own cloud account to benefit from existing pricing agreements and economies of scale with AWS b) be white labeled to look and feel like your own web portal c) utilize back end coupon technology to facilitate bundling of analysis with the sale of another product (eg kit, assay, service etc)
Please contact us directly should you be interested in any of these options or additional prepaid pricing schemes.
Highlights
- Provision in your own AWS account for both compute as well as storage to put you in control of your own IT governance, security and usage commitments with AWS.
- Direct integration with existing implementations of AWS HealthOmics to benefit from associated scalability and cost savings. Extend AWS HealthOmics capabilities through a graphical user interface and interactive visualization at the end of a ready-to-run or private workflow. In addition, obviate the need to prepare a manifest JSON file to load data.
- Optional productized white labeling and a coupon-based business operations layer mean Basepair provides a faster and more cost effective way of developing an associated analysis solution for Diagnostics manufacturers.
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Deployed on AWS
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Pricing
Free trial
Try this product free according to the free trial terms set by the vendor.
Pricing is based on actual usage, with charges varying according to how much you consume. Subscriptions have no end date and may be canceled any time.
Additional AWS infrastructure costs may apply. Use the AWS Pricing Calculator to estimate your infrastructure costs.
Dimension | Description | Cost/unit |
|---|---|---|
Free trial tier with 6 NGS samples | Free trial tier with 6 NGS samples | $0.00 |
Price per sample for CRISPR | Price per sample for CRISPR | $4.00 |
Price per sample for 16S | Price per sample for 16S | $20.00 |
Price per sample for bulk RNASeq | Price per sample for bulk RNASeq | $35.00 |
Price per sample for bulk CRISPR-sgDNA | Price per sample for bulk CRISPR-sgDNA | $100.00 |
Price per sample for ATAC-Seq | Price per sample for ATAC-Seq | $35.00 |
Price per sample for CHIP-Seq | Price per sample for CHIP-Seq | $35.00 |
Price per sample for CUTNRUN | Price per sample for CUTNRUN | $20.00 |
Price per sample for CUTNTAG | Price per sample for CUTNTAG | $20.00 |
Price per sample for Whole Exome or Panels | Price per sample for Whole Exome or Panels | $90.00 |
Vendor refund policy
Refunds are available on a case-by-case basis
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Delivery details
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Workflow Orchestration
Supports deployment, orchestration, and scaling of custom tools and pipelines using CLI or APIs across multiple workflow languages
Data Analysis Interface
Provides point-and-click graphical interface for uploading raw data and running industry-standard, peer-reviewed bioinformatics tools and pipelines
Cloud Architecture
Hybrid SaaS platform that provisions compute and storage resources directly in customer's AWS account with advanced enterprise features
Data Visualization
Interactive reporting and project sharing hierarchy for comprehensive exploration and collaborative analysis of genomic data
Integration Capabilities
Direct integration with AWS HealthOmics, enabling seamless extension of genomic analysis capabilities through graphical interface
Pipeline Orchestration
Unified control plane for developing, testing, and deploying data pipelines across distributed computing resources
Cloud Infrastructure Support
Native integration with AWS Batch and Amazon EKS for running data pipeline workloads
Workflow Management
Comprehensive tracking and logging of pipeline execution with browser and API accessibility
Access Control
Role-based user management and authentication for secure collaboration across organizations
Data Security
Industry-leading security and compliance mechanisms for protecting sensitive organizational data
Computational Environment Management
"Provides shareable, traceable, and version-controlled computational environments with complete code, data, and execution context encapsulation"
Workflow Automation
"Enables pipeline creation and scaling through visual editor, supporting Nextflow code generation and nf-core integration"
Data Lineage Tracking
"Implements an immutable graph tracking data processing steps, source origins, and computational transformations"
Collaborative Research Platform
"Supports multi-user computational research with centralized data management and resource sharing capabilities"
Programmatic Access
"Offers comprehensive API for executing computations, creating data assets, and retrieving metadata without direct user interface interaction"
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