Sold by: Code OceanÂ
Deployed on AWS
Collaborative, reproducible bioinformatics for R&D. Code Ocean is a reproducible and traceable computational science platform for collaborative research in the cloud. Set up environments, provision compute, develop analysis with others, and scale bioinformatics pipelines.
Overview
Code Ocean is a Computational Science platform for life science R&D teams who want a fast and efficient way to start, scale, collaborate, and reproduce computational research. It helps Computational Scientists set up and scale their workflows, work closer together, and lets them support non-coding bench scientists with accessible, intuitive applications. Built on FAIR data principles, it helps avoid technical debt, improves data architecture, and improves organizational compliance and quality.
Typical users include: computational biologists, bioinformaticians, research IT, R&D leadership.
Example use cases include: data analysis, data management, bioinformatics pipelines, AI & machine learning, multiomics, image processing, cloud management, result provenance.
Key features
Compute Capsules: a shareable, traceable, reproducible encapsulation of the code, data, and environments used in computational research, version controlled and linked to the results they produce.
Pipelines: Connect, automate, parallelize, and scale computational work. Build with the visual editor to auto-generate Nextflow code, import from nf-core, or write your own.
Data: a single place to manage all data assets in the cloud and from any other source. Use in computational work while tracking lineage, ensuring reproducibility, and reducing duplication.
Lineage Graph: an immutable record of how Result Data is generated within Code Ocean, showing the source, data processing through Capsules and Pipelines, and the output.
Collections: for gathering and organizing Capsules, Pipelines, Apps, and Data by project or scientific area of interest to make them more visible, accessible, and usable by others.
Apps: browse a selection of ready-to-use bioinformatics Apps, and take advantage of functionality to transform computational work into No-Code Apps for others to use.
Admin Panel: a single pane of glass for all users, resources, and data in your deployment. Manage integrations, cost and compute, and environments from a unified management console.
API: enables programmatic access without using the user interface. Tap into core functionality to run Computations, create Data Assets, retrieve metadata, and more.
Please use Private Offer to purchase and please contact us at support@codeocean.com to start a private offer.
Highlights
- Full reproducibility: Code Ocean technology guarantees computational reproducibility
- No lock-in: built entirely on open-source software, anything can be exported at any time
- An immutable record of how result data are generated
Details
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Delivery method
Delivery option
Code Ocean VPC Architecture
Latest version
Operating system
AmazonLinux 2.0.20250123.4
Deployed on AWS
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Features and programs
Financing for AWS Marketplace purchases
AWS Marketplace now accepts line of credit payments through the PNC Vendor Finance program. This program is available to select AWS customers in the US, excluding NV, NC, ND, TN, & VT.
Pricing
Pricing is based on the duration and terms of your contract with the vendor. This entitles you to a specified quantity of use for the contract duration. If you choose not to renew or replace your contract before it ends, access to these entitlements will expire.
Additional AWS infrastructure costs may apply. Use the AWS Pricing Calculator to estimate your infrastructure costs.
Dimension | Description | Cost/12 months |
|---|---|---|
User Seat | License to access and use Code Ocean software | $6,250.00 |
Vendor refund policy
We do not offer refunds. However, a trial period without commitment may be available in certain cases. Please reach out to sales for more information.
Legal
Vendor terms and conditions
Upon subscribing to this product, you must acknowledge and agree to the terms and conditions outlined in the vendor's End User License Agreement (EULA)Â .
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
Code Ocean VPC Architecture
Code Ocean VPC is installed in your AWS account. It can be installed into a new dedicated AWS VPC which follows AWS Well-Architected guidelines, or into an existing AWS VPC so that you can leverage existing AWS resources and easily align with company VPC guidelines and standards.
Code Ocean VPC deployments are managed with AWS CloudFormation infrastructure as code (IaC) service. A CloudFormation template is available for installation and upgrades and it provisions all AWS resources required to run Code Ocean in your AWS account. See our CloudFormation Deployment section.
Code Ocean is designed to enable secure cross-functional team collaboration while managing a large number of backend services, so you and your colleagues can focus on the research. The following diagram represents the most common system architecture for Code Ocean on AWS environments.
If you choose to install Code Ocean into its own dedicated AWS VPC the CloudFormation template will provision a new VPC across two availability zones with public and private subnets in your selected AWS region. The availability zones and CIDR blocks for VPC and subnets are configurable.
If you choose to install Code Ocean into an existing AWS VPC you can configure the CloudFormation template with the two availability zones and the private and public subnets to deploy to. Public subnets are required if you choose an internet-facing deployment. EC2
Code Ocean uses an HTTPS-only AWS application load balancer (ALB) to expose the system to users and to allow access to its internal Git server and Docker registry. The ALB can be internet-facing or internal for deployments behind a VPN.
CloudFormation Template (CFT)
AWS CloudFormation templates are JSON or YAML-formatted text files that simplify provisioning and management on AWS. The templates describe the service or application architecture you want to deploy, and AWS CloudFormation uses those templates to provision and configure the required services (such as Amazon EC2 instances or Amazon RDS DB instances). The deployed application and associated resources are called a "stack."
Version release notes
Additional details
Usage instructions
Resources
Vendor resources
Support
Vendor support
Customers can report issues at any time (24x7x365) by sending an email to support@codeocean.com . Code Ocean will make commercially reasonable efforts to respond during normal business hours, based on the severity of the issues, which determines the initial response and target resolution times. For more information about SLAs and support tiers, please contact us at support@codeocean.com .
AWS infrastructure support
AWS Support is a one-on-one, fast-response support channel that is staffed 24x7x365 with experienced and technical support engineers. The service helps customers of all sizes and technical abilities to successfully utilize the products and features provided by Amazon Web Services.
Updated weekly
By Code Ocean
By Domino Data Lab
By Seqera
Top
10
In Healthcare & Life Sciences
Top
10
In Data Analytics, High Performance Computing, Healthcare & Life Sciences
Sentiment is AI generated from actual customer reviews on AWS and G2
Functionality
Ease of use
Customer service
Cost effectiveness
Positive reviews
Mixed reviews
Negative reviews
AI generated from product descriptions
Computational Environment Management
"Provides shareable, traceable, and version-controlled computational environments with complete code, data, and execution context encapsulation"
Workflow Automation
"Enables pipeline creation and scaling through visual editor, supporting Nextflow code generation and nf-core integration"
Data Lineage Tracking
"Implements an immutable graph tracking data processing steps, source origins, and computational transformations"
Collaborative Research Platform
"Supports multi-user computational research with centralized data management and resource sharing capabilities"
Programmatic Access
"Offers comprehensive API for executing computations, creating data assets, and retrieving metadata without direct user interface interaction"
Machine Learning Operations (MLOps)
Integrated workflows and automation for enterprise-level model development, deployment, and monitoring across diverse computational environments
Tool and Infrastructure Ecosystem
Comprehensive support for open-source and commercial tools including Jupyter, RStudio, SAS, Anaconda, MATLAB, and distributed computing frameworks like Spark, Ray, Dask, and MPI
Cloud Deployment Flexibility
Supports hybrid and multi-cloud deployment options, including public cloud, on-premises, and seamless integration with Amazon SageMaker
Collaborative Knowledge Management
Centralized platform for cross-functional collaboration, knowledge sharing, and reproducible data science work across enterprise teams
Governance and Compliance Framework
Built-in audit-ready controls, model governance, monitoring, and reproducibility mechanisms for enterprise-level AI risk management
Pipeline Orchestration
Unified control plane for developing, testing, and deploying data pipelines across distributed computing resources
Cloud Infrastructure Support
Native integration with AWS Batch and Amazon EKS for running data pipeline workloads
Workflow Management
Comprehensive tracking and logging of pipeline execution with browser and API accessibility
Access Control
Role-based user management and authentication for secure collaboration across organizations
Data Security
Industry-leading security and compliance mechanisms for protecting sensitive organizational data
Standard contract
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