Sold by: Karyosoft Inc.
Mutation Discovery Made Easy
Overview
In life sciences, discovering molecular variations (SNPs and Indels) among individual microbes, plants, animals, and humans is a critical component of scientific innovations. As a known example, scientists have been sequencing coronaviruses and discovered different variants such as alpha, delta, omicron and more. The faster the molecular variations are discovered; the faster the scientists will find solutions for global problems in plants, animals, microbes, humans and other organisms.
Karyosoft's next generation Variants platform key benefits
- Faster (hours vs days) and can save up to 168 days for 96 samples (https://www.karyosoft.com/uc-davis-testimonial )
- Being web-based, the users can access Variants on any browser and any device.
- With a user-friendly interface, Variants can be operated by anyone with any level of computational skills with just 5 clicks.
- Flexibility to use single or multiple samples by uploading public or private data
- With an integrated queue manager, the users can run any number of jobs and learn the status of each job.
- Simple uploading of only reference genome in fasta, gff3 and paired end sequence data of your samples in fastq (any number).
- Flexibility to use single or multiple samples by uploading the public or private data directly from NCBI-SRA databases or through FTP link/AWS-S3 bucket.
- The users have options for changing the parameters; if not, the users can automate to run with default parameters.
- Integrated QC report for all your samples and will get 11 different quality parameters for your sample sequence data.
- Download all files such as indexed reference, samples, BAM files, VCF with annotations and more for other downstream applications.
The discovered mutations can be used for designing custom chip with highly informative SNPs/Indels for population screening, primer designing around mutations for amplicon sequencing, direct genotyping of your core population to discover allelic status from a single genomic locus through whole genome wide.
Highlights
- Faster (hours vs days) and can save up to 168 days for 96 samples
- With a user-friendly interface, Variants can be operated by anyone with any level of computational skills with 3 files and just 5 clicks.
- Integrated QC report for all your samples and will get 11 different quality parameters for your sample sequence data.
Details
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Deployed on AWS
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Pricing
Pricing is based on actual usage, with charges varying according to how much you consume. Subscriptions have no end date and may be canceled any time.
Additional AWS infrastructure costs may apply. Use the AWS Pricing Calculator to estimate your infrastructure costs.
Dimension | Cost/unit |
|---|---|
Application Host: Per Instance with 4 GPU / hr | $4.212 |
Storage: Per Instance for OS and Swap Storage minimum of 200 GB / hr | $0.035 |
Storage: Per Instance for Processing data minimum of 1TB /hr | $0.178 |
Storage Operational Speed: Per Storage of 3000 IOPS / hr | $0.271 |
Storage: Per Bucket minimum of 1TB / hr | $0.189 |
Variant App with 4 parallel computing / hr | $10.115 |
Dimensions summary
You pay by the hour across six separate usage dimensions that combine to run this genomic variant discovery tool. The Application Host charges for a compute instance with 4 GPUs. The Variant App dimension bills for processing with 4 parallel computing units. Four storage dimensions cover distinct needs: OS and swap storage starting at 200 GB, processing data storage starting at 1 TB, storage speed measured at 3000 IOPS, and bucket storage starting at 1 TB. Each dimension bills independently, so your total cost scales with the compute and storage capacity you use.
Top-of-mind questions for buyers
You get one compute instance with 4 GPUs, billed per hour. This dimension covers the processing hardware that runs the variant discovery workflow. It bills separately from the Variant App and storage dimensions, so your compute time accrues charges only while the instance runs.
All six dimensions bill independently and appear on the same invoice. The Application Host and Variant App charges track your compute and parallel processing hours. The four storage dimensions scale with capacity and speed. Compute-heavy runs raise host and app costs, while large datasets raise storage costs.
The Application Host and Variant App dimensions meter running hours, so a stopped instance stops accruing those charges. Storage dimensions bill for provisioned capacity, so OS, processing, and bucket storage may continue to accrue while data remains stored. Contact the vendor to confirm exact idle-state behavior.
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