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    RigoBERTa clinical classification

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    Deployed on AWS
    RigoBERTa Clinical Classification is a state-of-the-art encoder for Spanish clinical texts, built to help you fine-tune language models on your own classification datasets. Designed to support the development of highly accurate models, it allows you to adapt the encoder to your specific use case and labeling schema using your own clinical data. Structured clinical text classification tasks benefit more from a specialized Natural Language Understanding (NLU) approach than from Natural Language Generation (NLG) methods. Once fine-tuned, models can be seamlessly deployed for real-time or batch inference, enabling direct integration into clinical workflows and facilitating faster, more reliable decision-making

    Overview

    Easily fine-tune RigoBERTa Clinical on your own clinical data to develop highly accurate text classification models specifically tailored to your unique use case and labeling requirements.

    This targeted Natural Language Understanding (NLU) approach delivers superior performance compared to traditional Natural Language Generation (NLG) methods when applied to structured classification tasks.

    Once fine-tuned, your customized model is ready for seamless deployment and real-time inference, allowing for direct integration into clinical workflows and supporting faster, more reliable decision-making across healthcare applications

    RigoBERTa Clinical was built by further pretraining our general-purpose RigoBERTa 2 model on a meticulously Spanish curated clinical corpus, significantly improving performance on multiple clinical NLP benchmarks while offering robust language understanding in the clinical domain.

    To fine-tune RigoBERTa Clinical with your data, prepare a labeled dataset in JSON or CSV format and upload it to Amazon S3. Configure training parameters such as number of epochs, batch size, and learning rate, then launch a training job using Amazon SageMaker. After training is complete, deploy the model to a real-time endpoint to perform on-demand inference, or run batch prediction jobs for large-scale processing of clinical texts.

    An open-weight version of this model, intended solely for research and non-commercial use, is available on the public Hugging Face profile of IIC 

    Highlights

    • RigoBERTa Clinical is clinical encoder language model developed through domain-adaptive MLM pretraining on the largest publicly available Spanish clinical corpus, ClinText-SP
    • We recommend using this model as a foundation for clinical NLP applications by fine-tuning it on your own data for medical text classification tasks, such as clinical note labeling

    Details

    Delivery method

    Latest version

    Deployed on AWS

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    Pricing

    RigoBERTa clinical classification

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    Pricing is based on actual usage, with charges varying according to how much you consume. Subscriptions have no end date and may be canceled any time.
    Additional AWS infrastructure costs may apply. Use the AWS Pricing Calculator  to estimate your infrastructure costs.

    Usage costs (12)

     Info
    Dimension
    Description
    Cost/host/hour
    ml.g5.8xlarge Training
    Recommended
    Algorithm training on the ml.g5.8xlarge instance type
    $1.00
    ml.g5.8xlarge Inference (Batch)
    Recommended
    Model inference on the ml.g5.8xlarge instance type, batch mode
    $2.70
    ml.g5.8xlarge Inference (Real-Time)
    Recommended
    Model inference on the ml.g5.8xlarge instance type, real-time mode
    $2.70
    ml.g5.12xlarge Training
    Algorithm training on the ml.g5.12xlarge instance type
    $1.00
    ml.g5.12xlarge Inference (Batch)
    Model inference on the ml.g5.12xlarge instance type, batch mode
    $2.70
    ml.g5.12xlarge Inference (Real-Time)
    Model inference on the ml.g5.12xlarge instance type, real-time mode
    $2.70
    ml.g5.16xlarge Training
    Algorithm training on the ml.g5.16xlarge instance type
    $1.00
    ml.g5.16xlarge Inference (Batch)
    Model inference on the ml.g5.16xlarge instance type, batch mode
    $2.70
    ml.g5.16xlarge Inference (Real-Time)
    Model inference on the ml.g5.16xlarge instance type, real-time mode
    $2.70
    ml.g5.4xlarge Training
    Algorithm training on the ml.g5.4xlarge instance type
    $1.00

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    No refund policy

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    Usage information

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    Delivery details

    Amazon SageMaker algorithm

    An Amazon SageMaker algorithm is a machine learning model that requires your training data to make predictions. Use the included training algorithm to generate your unique model artifact. Then deploy the model on Amazon SageMaker for real-time inference or batch processing. Amazon SageMaker is a fully managed platform for building, training, and deploying machine learning models at scale.

    Deploy the model on Amazon SageMaker AI using the following options:
    Before deploying the model, train it with your data using the algorithm training process. You're billed for software and SageMaker infrastructure costs only during training. Duration depends on the algorithm, instance type, and training data size. When training completes, the model artifacts save to your Amazon S3 bucket. These artifacts load into the model when you deploy for real-time inference or batch processing. For more information, see Use an Algorithm to Run a Training Job  .
    Deploy the model as an API endpoint for your applications. When you send data to the endpoint, SageMaker processes it and returns results by API response. The endpoint runs continuously until you delete it. You're billed for software and SageMaker infrastructure costs while the endpoint runs. AWS Marketplace models don't support Amazon SageMaker Asynchronous Inference. For more information, see Deploy models for real-time inference  .
    Deploy the model to process batches of data stored in Amazon Simple Storage Service (Amazon S3). SageMaker runs the job, processes your data, and returns results to Amazon S3. When complete, SageMaker stops the model. You're billed for software and SageMaker infrastructure costs only during the batch job. Duration depends on your model, instance type, and dataset size. AWS Marketplace models don't support Amazon SageMaker Asynchronous Inference. For more information, see Batch transform for inference with Amazon SageMaker AI  .
    Version release notes

    This is the first version of our Spanish clinical text classification model. This initial release demonstrates our commitment to making Spanish machine learning resources. Our model has been trained on a diverse Spanish dataset to ensure robust performance and accuracy in various scenarios. While this is just the beginning, we are excited about the potential applications and improvements that future iterations will bring. We look forward to refining and enhancing our model based on user feedback and continued research.

    Additional details

    Inputs

    Summary

    The fine-tuned classification model accepts as input a JSON object containing a list of texts.

    { "inputs": [ "El paciente presenta disnea progresiva y fatiga desde hace una semana.", "Se indicĂł iniciar tratamiento con metformina por diagnĂłstico reciente de diabetes tipo 2.", "No se evidencian signos de infecciĂłn en la herida quirĂşrgica tras 10 dĂ­as de la operaciĂłn." ] }

    Input MIME type
    application/json, text/csv
    https://github.com/iiconocimiento/iic-aws/blob/main/notebooks/rigoberta-clinical/data/input/classification_input.json
    https://github.com/iiconocimiento/iic-aws/blob/main/notebooks/rigoberta-clinical/data/input/classification_input.json

    Input data descriptions

    The following table describes supported input data fields for real-time inference and batch transform.

    Field name
    Description
    Constraints
    Required
    inputs
    A list of strings to be classified by the model.
    Each text must be under 512 tokens.
    Yes

    Support

    AWS infrastructure support

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