Sold by: European Bioinformatics Institute
Open data
|
Deployed on AWS
All bacterial isolate whole-genome sequencing data from INSDC, uniformly assembled, quality-controlled, annotated, and searchable.
Overview
All bacterial isolate whole-genome sequencing data from INSDC, uniformly assembled, quality-controlled, annotated, and searchable.
Features and programs
Open Data Sponsorship Program
This dataset is part of the Open Data Sponsorship Program, an AWS program that covers the cost of storage for publicly available high-value cloud-optimized datasets.
Pricing
This is a publicly available data set. No subscription is required.
Legal
Content disclaimer
Vendors are responsible for their product descriptions and other product content. AWS does not warrant that vendors' product descriptions or other product content are accurate, complete, reliable, current, or error-free.
Delivery details
AWS Data Exchange (ADX)
AWS Data Exchange is a service that helps AWS easily share and manage data entitlements from other organizations at scale.
Open data resources
Available with or without an AWS account.
- How to use
- To access these resources, reference the Amazon Resource Name (ARN) using the AWS Command Line Interface (CLI). Learn more
- Description
- Individual, compressed genome assemblies in .fasta format in a public S3 bucket.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::allthebacteria-assemblies
- AWS region
- eu-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://allthebacteria-assemblies/
- Description
- Phylogenetically-compressed, batched xz archives of all genome assemblies in .fasta format in a public S3 bucket.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::allthebacteria-phylogeneticbatches
- AWS region
- eu-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://allthebacteria-phylogeneticbatches/
- Description
- Metadata for each genome assembly, including taxonomic information, in a public S3 bucket.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::allthebacteria-metadata
- AWS region
- eu-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://allthebacteria-metadata/
- Description
- A [LexicMap](https://github.com/shenwei356/LexicMap) index of all genome assemblies. This can be used for efficient sequence alignment against all genomes.
- Resource type
- S3 bucket
- Amazon Resource Name (ARN)
- arn:aws:s3:::allthebacteria-lexicmap
- AWS region
- eu-west-2
- AWS CLI access (No AWS account required)
- aws s3 ls --no-sign-request s3://allthebacteria-lexicmap/
Resources
Vendor resources
Support
Managed By
How to cite
AllTheBacteria was accessed on DATE from https://registry.opendata.aws/allthebacteria .
License
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